[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 27 items for (author: bartenschlager & r)

EMDB-15964:
Subtomogram averaging of SARS-CoV-2 nsp3-4 delta Ubl1-Mac1 obtained from cryo-ET of cryo-FIB milled VeroE6 cells transfected with nsp3-4 delta Ubl1-Mac1
Method: subtomogram averaging / : Chlanda P, Zimmermann L

EMDB-15965:
Subtomogram average of SARS-CoV-2 nsp3-4 delate Ubl1-Ubl2 obtained from cryo-ET of cryo-FIB milled VeroE6 cells transfected with nsp3-4 delta Ubl1-Ubl2
Method: subtomogram averaging / : Chlanda P, Zimmermann L

EMDB-15963:
Subtomogram average SARS-CoV-2 nsp3-4 from cryo-ET of VeroE6 expressing nsp3-4 (filtered to 20A resolution).
Method: subtomogram averaging / : Chlanda P, Zimmermann L

EMDB-15925:
Cryo-electron tomogram acquired on cryo-lamella of VeroE6 cells transfected with SARS-CoV-2 HA-nsp3-4-V5, plunge frozen at 16 hpt
Method: electron tomography / : Zimmermann L, Chlanda P

EMDB-15926:
Cryo-electron tomogram of VeroE6 cells transfected with HA-nsp3-deltaUbl1-Ubl2-nsp4-V5, plunge frozen at 16 hpt
Method: electron tomography / : Zimmermann L, Chlanda P

EMDB-15927:
Cryo-electron tomogram of VeroE6 cells transfected with HA-nsp3-deltaUbl1-Mac1-nsp4-V5. Cells were plunge-frozen at 16h post-transfection and subjected to cryo-FIB milling.
Method: electron tomography / : Chlanda P, Zimmermann L

EMDB-15928:
Cryo-electron tomogram of VeroE6 cells transfected with HA-GG>AA-nsp4-V5, plunge-frozen at 16 hpt and subjected to cryo-FIB milling.
Method: electron tomography / : Chlanda P, Zimmermann L

EMDB-15929:
Cryo-electron tomogram of VeroE6 cells transfected with nsp3-4, vitrified by plunge-freezing at 16 hours post transfection and processed by cryo-FIB milling.
Method: electron tomography / : Chlanda P, Zimmermann L

EMDB-15295:
African cichlid nackednavirus capsid at pH 7.5
Method: single particle / : Pfister S, Rabl J, Boehringer D, Meier BH

EMDB-16371:
African cichlid nackednavirus capsid at pH 5.5
Method: single particle / : Pfister S, Rabl J, Boehringer D, Meier BH

PDB-8aac:
African cichlid nackednavirus capsid at pH 7.5
Method: single particle / : Pfister S, Rabl J, Boehringer D, Meier BH

PDB-8c0o:
African cichlid nackednavirus capsid at pH 5.5
Method: single particle / : Pfister S, Rabl J, Boehringer D, Meier BH

EMDB-12940:
SARS-CoV-2-Induced Reshaping of Subcellular Morphologies
Method: electron tomography / : Cortese M, Schwab Y, Bartenschlager R, Schorb M

EMDB-11865:
Tomogram of SARS-CoV-2 infected and cryo-FIB milled VeroE6 cells
Method: electron tomography / : Klein S, Cortese M, Winter SL, Wachsmuth-Melm M, Neufeldt CJ, Cerikan B, Stanifer ML, Boulant S, Bartenschlager R, Chlanda P

EMDB-11863:
Cryo-ET of SARS-CoV-2 infected VeroE6 cells showing budding virions.
Method: electron tomography / : Klein S, Cortese M, Winter SL, Wachsmuth-Melm M, Neufeldt CJ, Cerikan B, Stanifer ML, Boulant S, Bartenschlager R, Chlanda P

EMDB-11866:
SARS-CoV-2 structure and replication characterized by in situ cryo-electron tomography
Method: electron tomography / : Klein S, Cortese M, Winter SL, Wachsmuth-Melm M, Neufleldt CJ, Cerikan B, Stanifer ML, Boulant S, Bartenschlager R, Chlanda P

EMDB-11867:
Cryo-ET of SARS-CoV-2 virions released from VerE6 cells
Method: electron tomography / : Klein S, Cortese M, Winter SL, Wachsmuth-Melm M, Neufeldt CJ, Cerikan B, Stanifer ML, Boulant S, Bartenschlager R, Chlanda P

EMDB-11868:
Subtomogram average of SARS-CoV-2 vRNP
Method: subtomogram averaging / : Klein S, Cortese M, Winter SL, Wachsmuth-Melm M, Neufeldt CJ, Cerikan B, Stanifer ML, Boulant S, Bartenschlager R, Chlanda P

EMDB-11493:
Subtomogram averaging of SARS-CoV-2 Spike Protein from unconcentrated virions: consensus structure of prefusion S trimers
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11494:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (3 closed RBDs)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11495:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (1 open RBD)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11496:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (2 open RBDs)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11497:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 3 Closed RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11498:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 2 Closed + 1 Weak RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

PDB-6zwv:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 3 Closed RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-3822:
Structure of the full-length African cichlid nackednavirus icosahedral capsid
Method: single particle / : Mattei S, Briggs JAG, Seitz S

EMDB-3823:
Structure of the truncated African cichlid nackednavirus icosahedral capsid
Method: single particle / : Mattei S, Briggs JAG, Seitz S

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more